SRR11680684

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

71/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Solenopsis invicta bulk RNA-seq from NextSeq 500 with ~24.9M reads and moderate quality (Q30: 83.4%, Q20: 87.8%), supporting fire ant transcriptomics with some caution for low-abundance features. The 39.8% GC is typical for formicid genomes.

Data type / assay

bulk-RNA-seq

Organism

Solenopsis invicta

Instrument

NextSeq 500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 1891245028 reported

total reads 24884803 reported

n content pct 0 measured

pct q20 bases 87.8 measured

pct q30 bases 83.4 measured

gc content pct 39.8 measured

mean read length 76 measured

mean base quality 32.1 measured

adapter content pct 10.38 measured

duplication rate pct 14.24 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 71/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 83.4 measured ×1 67%

mean base quality 32.1 measured ×0.6 68%

adapter content pct 10.38 measured ×0.4 53%

duplication rate pct 14.24 measured ×0.4 100%

QC cost 48 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0