Corpus 1,285 assessed · 1,186 scored · 647 reproduced ≥75 · 174 flagged ·∅ 73.9/100
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SRR11713501

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

83/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This HiSeq 2500 miRNA-seq from Anopheles gambiae delivered 12.3M reads across 615M bases with 98.2% Q20 and 96.8% Q30, providing high-confidence small-RNA data from this malaria vector. The 52% GC is expected for miRNA-enriched libraries. Reuse for comparative miRNA studies and vector-specific regulatory discovery is well-supported; the consistent quality across replicates suggests reliable quantitative miRNA analysis.

Data type / assay
bulk-RNA-seq
Organism
Anopheles gambiae
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 615811100 reported
total reads 12316222 reported
n content pct 0.003 measured
pct q20 bases 98.2 measured
pct q30 bases 96.8 measured
gc content pct 52 measured
mean read length 50 measured
mean base quality 38.3 measured
adapter content pct 0 measured
duplication rate pct 79.79 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 83/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96.8 measured ×1 100%
mean base quality 38.3 measured ×0.6 100%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 79.79 measured ×0.4 0%
QC cost 41 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0