SRR11713504

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

85/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Anopheles gambiae miRNA-seq on HiSeq 2500 with 12M reads and excellent quality (97.8% Q20, 96.1% Q30). Despite the small read count, high basecall quality is critical for miRNA studies where read length is ~50bp and accurate base discrimination matters. Suitable for miRNA profiling and discovery in this malaria-vector mosquito.

Data type / assay

bulk-RNA-seq

Organism

Anopheles gambiae

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 589854800 reported

total reads 11797096 reported

n content pct 0.003 measured

pct q20 bases 97.8 measured

pct q30 bases 96.1 measured

gc content pct 53.9 measured

mean read length 50 measured

mean base quality 38 measured

adapter content pct 0 measured

duplication rate pct 69.52 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 85/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96.1 measured ×1 100%

mean base quality 38 measured ×0.6 100%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 69.52 measured ×0.4 12%

QC cost 17 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0