Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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SRR1174698

SRA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

85/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

RNA-Seq (cnidarian, HiSeq 2500), large dataset (186M reads), grade B=85/100. Duplication at 71.83% (scored 7/100) mirrors SRR1174275 as the key limiting factor; Q30 (94.9%) and base quality (36.5%) are excellent, and adapter (0.54%) is low. High duplication warrants attention to library complexity despite exceptional depth and quality.

Data type / assay
bulk-RNA-seq
Organism
Hydractinia symbiolongicarpus
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 37283819000 reported
total reads 186419095 reported
n content pct 0.001 measured
pct q20 bases 98.3 measured
pct q30 bases 94.9 measured
gc content pct 45.5 measured
mean read length 100 measured
mean base quality 36.5 measured
adapter content pct 0.54 measured
duplication rate pct 71.83 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 85/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 94.9 measured ×1 100%
mean base quality 36.5 measured ×0.6 100%
adapter content pct 0.54 measured ×0.4 100%
duplication rate pct 71.83 measured ×0.4 7%
QC cost 30 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0

Scientific quality

Based on hands-on reproduction of the papers that use this dataset. A reproducible paper that stands on this data is positive evidence; a flagged one is a prompt to look closer — never a verdict on the dataset itself without the evidence.

1 studies use it 1 flagged mean score 68