SRR11776531

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

67/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Danaus plexippus (monarch butterfly) RNA-seq from HiSeq 3000 with 16M reads at outstanding quality (98.9% Q20, 96.9% Q30). Moderate depth with exceptional basecall accuracy supports isoform-level transcript quantification in this well-studied lepidopteran. Elevated GC (52.7%) is notable but reasonable for some Danaus tissue or condition.

Data type / assay

bulk-RNA-seq

Organism

Danaus plexippus

Instrument

Illumina HiSeq 3000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 4838144492 reported

total reads 16020346 reported

n content pct 0.007 measured

pct q20 bases 98.9 measured

pct q30 bases 96.9 measured

gc content pct 52.7 measured

mean read length 151 measured

mean base quality 39.7 measured

adapter content pct 39.02 measured

duplication rate pct 82.63 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 67/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96.9 measured ×1 100%

mean base quality 39.7 measured ×0.6 100%

adapter content pct 39.02 measured ×0.4 0%

duplication rate pct 82.63 measured ×0.4 0%

QC cost 32 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0