SRR11776537

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

79/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Danaus plexippus bulk RNA-seq from HiSeq 3000 generating ~57.4M reads with excellent quality (Q30: 95.4%, Q20: 97.9%), ideal for comprehensive monarch transcriptome profiling. The 45.5% GC is typical for lepidopterans and consistent with other Danaus libraries.

Data type / assay

bulk-RNA-seq

Organism

Danaus plexippus

Instrument

Illumina HiSeq 3000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 17322637252 reported

total reads 57359726 reported

n content pct 0.006 measured

pct q20 bases 97.9 measured

pct q30 bases 95.4 measured

gc content pct 45.5 measured

mean read length 151 measured

mean base quality 39.3 measured

adapter content pct 29.84 measured

duplication rate pct 42.74 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 79/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95.4 measured ×1 100%

mean base quality 39.3 measured ×0.6 100%

adapter content pct 29.84 measured ×0.4 0%

duplication rate pct 42.74 measured ×0.4 72%

QC cost 15 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0