Corpus 1,283 assessed · 1,184 scored · 647 reproduced ≥75 · 173 flagged ·∅ 73.9/100
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SRR11781563

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

70/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

ncRNA-Seq from Bombyx mori on an Illumina MiSeq with ~1.6 million exceptionally high-quality reads (97.4% Q30), serving as a biological replicate for ncRNA expression profiling. Enables robust quantification of long non-coding RNA expression across tissues or experimental conditions in the silkworm.

Data type / assay
bulk-RNA-seq
Organism
Bombyx mori
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 82741890 reported
total reads 1622390 reported
n content pct 0 measured
pct q20 bases 99.3 measured
pct q30 bases 97.4 measured
gc content pct 48.1 measured
mean read length 51 measured
mean base quality 36.8 measured
adapter content pct 94.57 measured
duplication rate pct 64.97 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 70/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 97.4 measured ×1 100%
mean base quality 36.8 measured ×0.6 100%
adapter content pct 94.57 measured ×0.4 0%
duplication rate pct 64.97 measured ×0.4 22%
QC cost 26 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0