SRR11794142

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

67/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

miRNA-Seq from the silkworm Bombyx mori using a HiSeq 2500 with ~18 million short reads (87.8% Q30), capturing the microRNA repertoire relevant to silk production, metamorphosis, and immune responses. Distinct from bulk mRNA-seq; search 'silkworm miRNA sequencing' or 'Bombyx mori small RNA'. Supports microRNA target discovery and regulatory network studies.

Data type / assay

bulk-RNA-seq

Organism

Bombyx mori

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 916415175 reported

total reads 17968925 reported

n content pct 0.018 measured

pct q20 bases 92.9 measured

pct q30 bases 87.8 measured

gc content pct 46.6 measured

mean read length 51 measured

mean base quality 35 measured

adapter content pct 90.97 measured

duplication rate pct 61.21 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 67/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 87.8 measured ×1 89%

mean base quality 35 measured ×0.6 100%

adapter content pct 90.97 measured ×0.4 0%

duplication rate pct 61.21 measured ×0.4 31%

QC cost 49 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0