Corpus 1,285 assessed · 1,186 scored · 647 reproduced ≥75 · 174 flagged ·∅ 73.9/100
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SRR11819622

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

67/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This HiSeq 4000 RNA-seq from Tribolium castaneum generated 9.2M reads with perfect Q20 and Q30 (100%) across 421M bases, delivering pristine data quality ideal for detecting rare transcripts and splice variants. The 46.9% GC is expected. Reuse for high-confidence developmental transcriptomics is well-supported; caveat that moderate overall depth limits power for detecting subtle differences in lowly-expressed genes.

Data type / assay
bulk-RNA-seq
Organism
Tribolium castaneum
Instrument
Illumina HiSeq 4000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 421011282 reported
total reads 9267486 reported
n content pct 0.002 measured
pct q20 bases 100 measured
pct q30 bases 100 measured
gc content pct 46.9 measured
mean read length 45.3 measured
mean base quality 30 measured
adapter content pct 1.36 measured
duplication rate pct 75.04 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 67/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 100 measured ×1 100%
mean base quality 30 measured ×0.6 33%
adapter content pct 1.36 measured ×0.4 100%
duplication rate pct 75.04 measured ×0.4 0%
QC cost 39 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0