Corpus 1,285 assessed · 1,186 scored · 647 reproduced ≥75 · 174 flagged ·∅ 73.9/100
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SRR11819625

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

67/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Perfect-quality bulk RNA-seq of the flour beetle Tribolium castaneum (100% Q30 bases, zero N content) from a HiSeq 4000 with ~15 million reads. This well-characterized model organism dataset supports validation of gene expression predictions and studies of insect development and metamorphosis. Flawless read quality makes it suitable for sensitive downstream analyses and rare-variant detection.

Data type / assay
bulk-RNA-seq
Organism
Tribolium castaneum
Instrument
Illumina HiSeq 4000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 693705928 reported
total reads 14874511 reported
n content pct 0 measured
pct q20 bases 100 measured
pct q30 bases 100 measured
gc content pct 43.3 measured
mean read length 46.6 measured
mean base quality 30 measured
adapter content pct 0.18 measured
duplication rate pct 78.03 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 67/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 100 measured ×1 100%
mean base quality 30 measured ×0.6 33%
adapter content pct 0.18 measured ×0.4 100%
duplication rate pct 78.03 measured ×0.4 0%
QC cost 50 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0