Corpus 1,285 assessed · 1,186 scored · 647 reproduced ≥75 · 174 flagged ·∅ 73.9/100
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SRR11870680

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

67/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Aedes aegypti RNA-seq on HiSeq 2000 with only 11M reads but exceptional quality (99.4% Q20, 98.3% Q30). Ultra-high basecall accuracy is rare and valuable for isoform-level quantification or novel transcript discovery in this mosquito vector. Limited depth may constrain detection of very lowly-expressed genes, but quality-to-depth trade-off favors sensitive transcript characterization.

Data type / assay
bulk-RNA-seq
Organism
Aedes aegypti
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 540781407 reported
total reads 10603557 reported
n content pct 0.049 measured
pct q20 bases 99.4 measured
pct q30 bases 98.3 measured
gc content pct 50 measured
mean read length 51 measured
mean base quality 39.8 measured
adapter content pct 80.52 measured
duplication rate pct 76.6 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 67/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 98.3 measured ×1 100%
mean base quality 39.8 measured ×0.6 100%
adapter content pct 80.52 measured ×0.4 0%
duplication rate pct 76.6 measured ×0.4 0%
QC cost 16 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0