Corpus 1,285 assessed · 1,186 scored · 647 reproduced ≥75 · 174 flagged ·∅ 73.9/100
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SRR11870686

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

67/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This HiSeq 2000 RNA-seq from Aedes aegypti produced 8.5M reads spanning 437M bases with 99.6% Q20 and 98.8% Q30, delivering high-quality but limited-depth transcriptome data from this important dengue vector. The exceptional base quality compensates for the modest read count. Reuse for targeted gene-expression studies and isoform-level analysis is feasible; caveat that comprehensive transcriptome coverage requires pooling with additional replicates.

Data type / assay
bulk-RNA-seq
Organism
Aedes aegypti
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 437858409 reported
total reads 8585459 reported
n content pct 0.011 measured
pct q20 bases 99.6 measured
pct q30 bases 98.8 measured
gc content pct 49.4 measured
mean read length 51 measured
mean base quality 40 measured
adapter content pct 93.06 measured
duplication rate pct 92.39 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 67/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 98.8 measured ×1 100%
mean base quality 40 measured ×0.6 100%
adapter content pct 93.06 measured ×0.4 0%
duplication rate pct 92.39 measured ×0.4 0%
QC cost 33 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0