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Provenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
1 further paper cites this accession but reuse could not be confirmed.
Deep data QC
67/100 · DStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
bulk-RNA-seq
Organism
Aedes aegypti
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
627953565
reported
total reads
12312815
reported
n content pct
0.034
measured
pct q20 bases
99.6
measured
pct q30 bases
98.9
measured
gc content pct
50.7
measured
mean read length
51
measured
mean base quality
40
measured
adapter content pct
91.45
measured
duplication rate pct
81.53
measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 67/100
The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
98.9
measured
×1
100%
mean base quality
40
measured
×0.6
100%
adapter content pct
91.45
measured
×0.4
0%
duplication rate pct
81.53
measured
×0.4
0%
QC cost
36 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0