SRR11881328

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

94/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Bombus impatiens (bumblebee) RNA-seq from HiSeq 4000 with 27M reads at excellent quality (98.2% Q20, 95.4% Q30). High basecall accuracy and reasonable depth support comprehensive expression profiling and isoform discovery in this important pollinator model. Consistent quality with other Bombus samples (SRR11881331, SRR11881326) enables reliable multi-sample analysis.

Data type / assay

bulk-RNA-seq

Organism

Bombus impatiens

Instrument

Illumina HiSeq 4000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 5459164400 reported

total reads 27295822 reported

n content pct 0.028 measured

pct q20 bases 98.2 measured

pct q30 bases 95.4 measured

gc content pct 41.4 measured

mean read length 100 measured

mean base quality 39.1 measured

adapter content pct 0.59 measured

duplication rate pct 45.65 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 94/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95.4 measured ×1 100%

mean base quality 39.1 measured ×0.6 100%

adapter content pct 0.59 measured ×0.4 100%

duplication rate pct 45.65 measured ×0.4 65%

QC cost 31 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0