Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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SRR12020510

ENA first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

98/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This HiSeq 1500 WES (whole-exome sequencing) dataset spans 1B bases across 4.1M short reads via targeted capture with 97.9% Q20 and 95.5% Q30, ideal for variant discovery in coding regions of an unnamed organism. The exome enrichment provides deep coverage per target base. Reuse requires knowing the capture kit and organism; caveat that organism identity is missing, limiting interpretation of variant functional impact.

Data type / assay
WES
Instrument
Illumina HiSeq 1500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 1041538428 reported
total reads 4133089 reported
n content pct 0.002 measured
pct q20 bases 97.9 measured
pct q30 bases 95.5 measured
gc content pct 45.6 measured
mean read length 126 measured
mean base quality 36 measured
adapter content pct 2.34 measured
duplication rate pct 2.22 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 98/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WES thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95.5 measured ×1 100%
duplication rate pct 2.22 measured ×0.5 100%
adapter content pct 2.34 measured ×0.4 90%
QC cost 42 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0