SRR12031953

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

98/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Apis mellifera (honey bee) RNA-seq from HiSeq 2500 with 22M reads and outstanding quality (98.3% Q20, 94.9% Q30). Clean, deep sequencing on a reliable platform enables comprehensive transcript characterization in this well-studied eusocial insect model. Minimal N (0.001%) and balanced GC (41%) support both expression and isoform studies.

Data type / assay

bulk-RNA-seq

Organism

Apis mellifera

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 6482806246 reported

total reads 21673296 reported

n content pct 0.001 measured

pct q20 bases 98.3 measured

pct q30 bases 94.9 measured

gc content pct 41 measured

mean read length 149.5 measured

mean base quality 36.2 measured

adapter content pct 0 measured

duplication rate pct 34.36 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 98/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 94.9 measured ×1 100%

mean base quality 36.2 measured ×0.6 100%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 34.36 measured ×0.4 90%

QC cost 22 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0