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Provenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
1 further paper cites this accession but reuse could not be confirmed.
Deep data QC
39/100 · FStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
amplicon
Organism
Human immunodeficiency virus 1
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
1675580312
reported
total reads
2783356
reported
n content pct
0
measured
pct q20 bases
90.1
measured
pct q30 bases
81.7
measured
gc content pct
36.7
measured
mean read length
301
measured
mean base quality
33.4
measured
adapter content pct
33.23
measured
duplication rate pct
93.55
measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 39/100
The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
81.7
measured
×1
59%
adapter content pct
33.23
measured
×0.5
0%
QC cost
25 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0