SRR12102997

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

95/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Microvelia longipes (water strider) RNA-seq from HiSeq 4000 with 50M reads and excellent quality (95.9% Q20, 89.8% Q30). Solid depth and basecall metrics support reliable transcript quantification in this understudied hemipteran insect. Low N (0.002%) and stable GC (37.9%) across the Microvelia samples indicate consistent library quality.

Data type / assay

bulk-RNA-seq

Organism

Microvelia longipes

Instrument

Illumina HiSeq 4000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 15049372800 reported

total reads 50164576 reported

n content pct 0.002 measured

pct q20 bases 95.9 measured

pct q30 bases 89.8 measured

gc content pct 37.9 measured

mean read length 150 measured

mean base quality 37.5 measured

adapter content pct 0.56 measured

duplication rate pct 41.97 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 95/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 89.8 measured ×1 99%

mean base quality 37.5 measured ×0.6 100%

adapter content pct 0.56 measured ×0.4 100%

duplication rate pct 41.97 measured ×0.4 73%

QC cost 28 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0