Corpus 1,285 assessed · 1,186 scored · 647 reproduced ≥75 · 174 flagged ·∅ 73.9/100
← Dataset search

SRR12103001

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

98/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This HiSeq 4000 RNA-seq from the water strider Microvelia longipes delivered 50.4M reads spanning 15.1B bases with 96.9% Q20 and 92.1% Q30, enabling very-high-depth transcriptome profiling for studying aquatic-insect physiology and predatory behavior. The 37.9% GC is within typical insect range. Reuse is excellent for comparative hemipteran genomics and identifying neuro-sensory genes; the exceptional read count enables rare-isoform detection.

Data type / assay
bulk-RNA-seq
Organism
Microvelia longipes
Instrument
Illumina HiSeq 4000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 15146692800 reported
total reads 50488976 reported
n content pct 0.004 measured
pct q20 bases 96.9 measured
pct q30 bases 92.1 measured
gc content pct 37.9 measured
mean read length 150 measured
mean base quality 38.2 measured
adapter content pct 0.46 measured
duplication rate pct 36.37 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 98/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 92.1 measured ×1 100%
mean base quality 38.2 measured ×0.6 100%
adapter content pct 0.46 measured ×0.4 100%
duplication rate pct 36.37 measured ×0.4 86%
QC cost 36 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0