SRR12113440

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

81/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

NextSeq 500 bulk RNA-seq of the wax moth Galleria mellonella with ~19 million reads and moderate quality (86.4% Q30). As a widely used model for insect innate immunity and pathogen research, the dataset supports immune-challenge studies and infection-response gene expression profiling. Note the slightly lower Q30 percentage relative to HiSeq platforms in this collection.

Data type / assay

bulk-RNA-seq

Organism

Galleria mellonella

Instrument

NextSeq 500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 5451263127 reported

total reads 18637369 reported

n content pct 0 measured

pct q20 bases 93.4 measured

pct q30 bases 86.4 measured

gc content pct 34.2 measured

mean read length 147.1 measured

mean base quality 33.1 measured

adapter content pct 0 measured

duplication rate pct 50.51 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 81/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 86.4 measured ×1 82%

mean base quality 33.1 measured ×0.6 85%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 50.51 measured ×0.4 54%

QC cost 27 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0