SRR12121631

SRA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

97/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

Homo sapiens

Instrument

Sequel II

Platform

PACBIO_SMRT

Read type

long-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

gc sd 7.1 measured

checksum ok yes reported

total bases 422210093561 reported

total reads 26040594 reported

mean coverage 136.2 extrapolated

n content pct 0 measured

sampled bases 175649655 measured

sampled reads 10248 measured

gc content pct 41.4 measured

polyg tail pct 0.23 measured

read length sd 11817.2 measured

read length max 216012 measured

read length min 53 measured

read length n50 18391 measured

max base quality 0 measured

mean read length 17139.9 measured

max n pct per pos 0 measured

pct reads lt 100bp 0.07 measured

read length median 16986.5 measured

adapter content pct 0 measured

duplication rate pct 0.34 measured

overrepresented top pct 0.31 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 97/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 136.2 extrapolated ×1.2 100%

read length n50 18391 measured ×1 91%

duplication rate pct 0.34 measured ×0.5 100%

adapter content pct 0 measured ×0.4 100%

QC cost 3.7 min compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0