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SRR1217560
SRAProvenance — who produced it, who reused it
Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
No linked papers found in the corpus yet.
Deep data QC
88/100 · BStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
WGS
Organism
Gallus gallus
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
54946656600
reported
total reads
183155522
reported
mean coverage
50
extrapolated
n content pct
0.126
measured
pct q20 bases
91.2
measured
pct q30 bases
82.6
measured
gc content pct
42.8
measured
mean read length
150
measured
mean base quality
33
measured
adapter content pct
0.08
measured
duplication rate pct
0.43
measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 88/100
The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.
mean coverage
50
extrapolated
×1.2
100%
pct q30 bases
82.6
measured
×1
63%
duplication rate pct
0.43
measured
×0.5
100%
adapter content pct
0.08
measured
×0.4
100%
QC cost
25 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0