SRR12177802

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

77/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

This bulk RNA-seq of the cricket Gryllus bimaculatus from a NextSeq 550 yields ~48 million high-quality short reads (89.5% Q30) spanning the expressed transcriptome. Enables studies of insect gene expression, development, and comparative genomics across arthropod lineages. Suitable for transcriptome assembly, splice-variant discovery, and expression profiling in orthopterans.

Data type / assay

bulk-RNA-seq

Organism

Gryllus bimaculatus

Instrument

NextSeq 550

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 14401891672 reported

total reads 47814783 reported

n content pct 0.018 measured

pct q20 bases 93.5 measured

pct q30 bases 89.5 measured

gc content pct 38.1 measured

mean read length 150.5 measured

mean base quality 33.6 measured

adapter content pct 21.27 measured

duplication rate pct 39.86 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 77/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 89.5 measured ×1 98%

mean base quality 33.6 measured ×0.6 93%

adapter content pct 21.27 measured ×0.4 0%

duplication rate pct 39.86 measured ×0.4 78%

QC cost 46 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0