SRR12300194

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

80/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

bulk-RNA-seq

Organism

Zea mays

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 11780312400 reported

total reads 39267708 reported

n content pct 0.004 measured

pct q20 bases 96.4 measured

pct q30 bases 92.4 measured

gc content pct 55.2 measured

mean read length 150 measured

mean base quality 38.4 measured

adapter content pct 17.59 measured

duplication rate pct 43.8 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 80/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 92.4 measured ×1 100%

mean base quality 38.4 measured ×0.6 100%

adapter content pct 17.59 measured ×0.4 13%

duplication rate pct 43.8 measured ×0.4 69%

QC cost 28 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0