SRR12358254

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

92/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Helicoverpa armigera bulk RNA-seq (Grade A). Exceptional base quality (mean Q38.6, 93.9% Q30+) and excellent adapter removal (0.67%) make this reliable for transcriptomic reuse. Moderate duplication (50.67%) is standard and does not significantly impact gene-level quantification.

Data type / assay

bulk-RNA-seq

Organism

Helicoverpa armigera

Instrument

Illumina HiSeq 4000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 1450545032 reported

total reads 7180916 reported

n content pct 0.003 measured

pct q20 bases 98 measured

pct q30 bases 93.9 measured

gc content pct 50.3 measured

mean read length 101 measured

mean base quality 38.6 measured

adapter content pct 0.67 measured

duplication rate pct 50.67 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 92/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 93.9 measured ×1 100%

mean base quality 38.6 measured ×0.6 100%

adapter content pct 0.67 measured ×0.4 100%

duplication rate pct 50.67 measured ×0.4 54%

QC cost 1.1 min compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0