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SRR1239629
SRAProvenance — who produced it, who reused it
Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
No linked papers found in the corpus yet.
Deep data QC
60/100 · DStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
WGS
Organism
Oryza sativa
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
1119945512
reported
total reads
6222692
reported
mean coverage
2.6
extrapolated
n content pct
0
measured
pct q20 bases
97.1
measured
pct q30 bases
93.3
measured
gc content pct
39.9
measured
mean read length
90
measured
mean base quality
36.3
measured
adapter content pct
0
measured
duplication rate pct
10.65
measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 60/100
The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.
mean coverage
2.6
extrapolated
×1.2
0%
pct q30 bases
93.3
measured
×1
100%
duplication rate pct
10.65
measured
×0.5
92%
adapter content pct
0
measured
×0.4
100%
QC cost
29 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0