SRR1239659

SRA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

60/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

Oryza sativa

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 1118137549 reported

total reads 6212475 reported

mean coverage 2.6 extrapolated

n content pct 0.003 measured

pct q20 bases 96.3 measured

pct q30 bases 90.7 measured

gc content pct 40 measured

mean read length 90 measured

mean base quality 35.4 measured

adapter content pct 0 measured

duplication rate pct 10.93 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 60/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 2.6 extrapolated ×1.2 0%

pct q30 bases 90.7 measured ×1 100%

duplication rate pct 10.93 measured ×0.5 91%

adapter content pct 0 measured ×0.4 100%

QC cost 21 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0