SRR12460192

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

83/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

miRNA-seq (Illumina HiSeq 4000). B-grade QC (83/100, fully measured); exceptional base quality (pct_q30=99.3%, mean_base_quality=40) scored 100/100, but extreme 83.93% duplication (scored 0/100) indicates nearly all reads are PCR clones—unsuitable for discovery. Usable only for abundant, previously-identified miRNAs.

Data type / assay

bulk-RNA-seq

Organism

Bactrocera dorsalis

Instrument

Illumina HiSeq 4000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 466941669 reported

total reads 9155719 reported

n content pct 0.001 measured

pct q20 bases 99.8 measured

pct q30 bases 99.3 measured

gc content pct 49.5 measured

mean read length 51 measured

mean base quality 40 measured

adapter content pct 0 measured

duplication rate pct 83.93 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 83/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 99.3 measured ×1 100%

mean base quality 40 measured ×0.6 100%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 83.93 measured ×0.4 0%

QC cost 33 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0