SRR12496110

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

68/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Bactrocera dorsalis miRNA-Seq on HiSeq 2500 with perfect quality scores (100% ≥Q20 and Q30) and 33M reads. Comprehensive microRNA expression dataset ideal for regulatory RNA analysis and comparative insect developmental transcriptomics.

Data type / assay

bulk-RNA-seq

Organism

Bactrocera dorsalis

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 785244957 reported

total reads 33354709 reported

n content pct 0.149 measured

pct q20 bases 100 measured

pct q30 bases 100 measured

gc content pct 43.9 measured

mean read length 23.7 measured

mean base quality 30 measured

adapter content pct 0 measured

duplication rate pct 71.27 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 68/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 100 measured ×1 100%

mean base quality 30 measured ×0.6 33%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 71.27 measured ×0.4 8%

QC cost 42 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0