SRR12512270

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

85/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Aedes miRNA-seq with pristine base quality (Q30=92.7%) and no adapters but pronounced PCR duplication (70.04%)—acceptable for miRNA abundance discovery but lacks dynamic range for rigorous quantification. Suitable for biased-toward-abundant reuse. Evidence strength is low.

Data type / assay

bulk-RNA-seq

Organism

Aedes albopictus

Instrument

BGISEQ-500

Platform

BGISEQ

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 539458615 reported

total reads 22470049 reported

n content pct 0.001 measured

pct q20 bases 99.1 measured

pct q30 bases 92.7 measured

gc content pct 49.8 measured

mean read length 24 measured

mean base quality 35.5 measured

adapter content pct 0 measured

duplication rate pct 70.04 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 85/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 92.7 measured ×1 100%

mean base quality 35.5 measured ×0.6 100%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 70.04 measured ×0.4 11%

QC cost 39 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0