SRR12512271

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

84/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

miRNA-seq (BGISEQ-500). B-grade QC (84/100, fully measured); good base quality (pct_q30=92.5%) and expected 22.3 bp short reads indicate proper small RNA capture, but 72.89% duplication (scored 5/100) critically reduces diversity—expected for miRNA but limits quantitation. Usable for relative studies only; deduplication essential.

Data type / assay

bulk-RNA-seq

Organism

Aedes albopictus

Instrument

BGISEQ-500

Platform

BGISEQ

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 478977925 reported

total reads 21517527 reported

n content pct 0 measured

pct q20 bases 99 measured

pct q30 bases 92.5 measured

gc content pct 51.2 measured

mean read length 22.3 measured

mean base quality 35.5 measured

adapter content pct 0 measured

duplication rate pct 72.89 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 84/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 92.5 measured ×1 100%

mean base quality 35.5 measured ×0.6 100%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 72.89 measured ×0.4 5%

QC cost 35 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0