Corpus 1,276 assessed · 1,177 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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SRR1252007

ENA first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

74/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This HiSeq 2000 WGS from the medicinal plant Panax ginseng produced 1.7M reads spanning 380M bases with 99.8% Q20 and 97.6% Q30, providing shallow whole-genome coverage suitable for SNP discovery and population genetics. The 34.2% GC is lower than typical animals, reflecting plant genome composition. Reuse for phylogeography and germplasm characterization is straightforward; caveat that shallow coverage limits structural-variant detection.

Data type / assay
WGS
Organism
Panax ginseng
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 380429720 reported
total reads 1729226 reported
n content pct 0 measured
pct q20 bases 99.8 measured
pct q30 bases 97.6 measured
gc content pct 34.2 measured
mean read length 110 measured
mean base quality 37.4 measured
adapter content pct 0.02 measured
duplication rate pct 69.97 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 74/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 97.6 measured ×1 100%
duplication rate pct 69.97 measured ×0.5 0%
adapter content pct 0.02 measured ×0.4 100%
QC cost 55 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0