SRR12527964

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

99/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Bombus opulentus (bumblebee) bulk RNA-Seq via HiSeq X Ten with excellent quality (99.1% ≥Q20, 97.2% ≥Q30) and 24M reads. Robust dataset for hymenopteran gene expression profiling, supporting social insect genomics and comparative transcriptomics.

Data type / assay

bulk-RNA-seq

Organism

Bombus opulentus

Instrument

HiSeq X Ten

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 7186718400 reported

total reads 23955728 reported

n content pct 0 measured

pct q20 bases 99.1 measured

pct q30 bases 97.2 measured

gc content pct 40.5 measured

mean read length 150 measured

mean base quality 39.8 measured

adapter content pct 0 measured

duplication rate pct 32.26 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 99/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 97.2 measured ×1 100%

mean base quality 39.8 measured ×0.6 100%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 32.26 measured ×0.4 95%

QC cost 36 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0