Corpus 1,285 assessed · 1,186 scored · 647 reproduced ≥75 · 174 flagged ·∅ 73.9/100
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SRR12572617

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

95/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This Epargyreus clarus (silver-spotted skipper butterfly) bulk RNA-seq on an Illumina HiSeq 4000 contains 26.8 million short reads (2.1 billion bases) with moderate quality (92.5% Q20, 88.9% Q30). The 41.9% GC content is consistent with Lepidoptera transcriptomes. Suitable for gene expression profiling and comparative transcriptomics, though the Q30 rate is lower than modern standards and may require careful preprocessing. High read count supports detection of moderately expressed transcripts.

Data type / assay
bulk-RNA-seq
Organism
Epargyreus clarus
Instrument
Illumina HiSeq 4000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 2138065129 reported
total reads 26885258 reported
n content pct 0.003 measured
pct q20 bases 92.5 measured
pct q30 bases 88.9 measured
gc content pct 41.9 measured
mean read length 79.5 measured
mean base quality 33.3 measured
adapter content pct 0 measured
duplication rate pct 30.66 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 95/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 88.9 measured ×1 95%
mean base quality 33.3 measured ×0.6 88%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 30.66 measured ×0.4 99%
QC cost 1.7 min compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0