Corpus 1,285 assessed · 1,186 scored · 647 reproduced ≥75 · 174 flagged ·∅ 73.9/100
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SRR12572647

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

91/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Swimming crab (Epargyreus clarus) bulk RNA-seq; reliable and recommended for reuse (grade A). Clean profile with zero adapter contamination and solid Q30 content (89.2%) and mean base quality (33.4); modest cDNA duplication (43.16%, scored 71/100) is expected library-complexity variation that does not degrade quantification. All measurements are confirmed, supporting confident gene expression analysis.

Data type / assay
bulk-RNA-seq
Organism
Epargyreus clarus
Instrument
Illumina HiSeq 4000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 2640239451 reported
total reads 33203922 reported
n content pct 0.002 measured
pct q20 bases 92.7 measured
pct q30 bases 89.2 measured
gc content pct 40.7 measured
mean read length 79.5 measured
mean base quality 33.4 measured
adapter content pct 0 measured
duplication rate pct 43.16 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 91/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 89.2 measured ×1 96%
mean base quality 33.4 measured ×0.6 90%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 43.16 measured ×0.4 71%
QC cost 57 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0