Corpus 1,285 assessed · 1,186 scored · 647 reproduced ≥75 · 174 flagged ·∅ 73.9/100
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SRR12663738

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

70/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This Aedes aegypti (yellow fever mosquito) miRNA-seq on an Illumina HiSeq 4000 yielded 8.2 million short reads (414.7 million bases) with excellent quality (99.3% Q20, 97.9% Q30). The 47% GC content is consistent with insect miRNA profiles, which are often GC-rich. This dataset is ideally suited for miRNA discovery, expression quantification, and investigation of post-transcriptional gene regulation in an important disease vector. Read depth supports detection of moderately-abundant miRNAs.

Data type / assay
bulk-RNA-seq
Organism
Aedes aegypti
Instrument
Illumina HiSeq 4000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 414711850 reported
total reads 8294237 reported
n content pct 0.024 measured
pct q20 bases 99.3 measured
pct q30 bases 97.9 measured
gc content pct 47 measured
mean read length 50 measured
mean base quality 39.7 measured
adapter content pct 92.49 measured
duplication rate pct 66.24 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 70/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 97.9 measured ×1 100%
mean base quality 39.7 measured ×0.6 100%
adapter content pct 92.49 measured ×0.4 0%
duplication rate pct 66.24 measured ×0.4 20%
QC cost 54 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0