SRR12663740

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

70/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Aedes aegypti miRNA-Seq from HiSeq 4000 with 3.9M reads at very high quality (99.3% ≥Q20, 98% ≥Q30). Excellent dataset for microRNA profiling in disease vectors, supporting studies of mosquito physiology, immunity, and viral vector competence.

Data type / assay

bulk-RNA-seq

Organism

Aedes aegypti

Instrument

Illumina HiSeq 4000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 198951800 reported

total reads 3979036 reported

n content pct 0.023 measured

pct q20 bases 99.3 measured

pct q30 bases 98 measured

gc content pct 47.4 measured

mean read length 50 measured

mean base quality 39.7 measured

adapter content pct 90.41 measured

duplication rate pct 66.51 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 70/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 98 measured ×1 100%

mean base quality 39.7 measured ×0.6 100%

adapter content pct 90.41 measured ×0.4 0%

duplication rate pct 66.51 measured ×0.4 19%

QC cost 42 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0