SRR12664584

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

95/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Oxford Nanopore MinION long-read whole-genome sequencing of activated sludge metagenome with 759,000 reads at perfect quality (Q20/Q30=100%) across 3.1 billion bases. This environmental metagenome dataset captures complete microbial genomes and plasmid sequences in wastewater communities, enabling full-length 16S-like marker gene assembly and functional genomics impossible with short reads.

Data type / assay

WGS

Organism

activated sludge metagenome

Instrument

MinION

Platform

OXFORD_NANOPORE

Read type

long-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 3144937368 reported

total reads 759368 reported

n content pct 0 measured

pct q20 bases 100 measured

pct q30 bases 100 measured

gc content pct 55.1 measured

mean read length 4120.8 measured

mean base quality 30 measured

adapter content pct 0 measured

duplication rate pct 13.55 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 95/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 100 measured ×1 100%

duplication rate pct 13.55 measured ×0.5 83%

adapter content pct 0 measured ×0.4 100%

QC cost 42 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0