SRR12664616

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Activated sludge metagenome long-read WGS (Oxford Nanopore MinION) with very limited sequencing (1,188 long reads, 42.6M bases) and perfect quality (100% ≥Q20 and Q30). Too sparse for metagenomic assembly; suitable only for targeted genomic regions or reference validation.

Data type / assay

WGS

Organism

activated sludge metagenome

Instrument

MinION

Platform

OXFORD_NANOPORE

Read type

long-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 42663034 reported

total reads 1188 reported

n content pct 0 measured

pct q20 bases 100 measured

pct q30 bases 100 measured

gc content pct 59.8 measured

mean read length 35911.6 measured

mean base quality 30 measured

adapter content pct 0.08 measured

duplication rate pct 0.93 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 100 measured ×1 100%

duplication rate pct 0.93 measured ×0.5 100%

adapter content pct 0.08 measured ×0.4 100%

QC cost 13 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0