SRR12695262

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

90/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Bulk RNA-seq of Danaus plexippus (monarch butterfly) on HiSeq 2500; 46.3M reads at excellent quality (Q30 95%) enable comprehensive transcriptome assembly and expression quantification. Large dataset suitable for comparative insect genomics, developmental profiling, and migratory physiology studies.

Data type / assay

bulk-RNA-seq

Organism

Danaus plexippus

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 9261988000 reported

total reads 46309940 reported

n content pct 0.011 measured

pct q20 bases 98.3 measured

pct q30 bases 95 measured

gc content pct 46.1 measured

mean read length 100 measured

mean base quality 39 measured

adapter content pct 0.03 measured

duplication rate pct 56.2 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 90/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95 measured ×1 100%

mean base quality 39 measured ×0.6 100%

adapter content pct 0.03 measured ×0.4 100%

duplication rate pct 56.2 measured ×0.4 42%

QC cost 54 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0