Corpus 1,277 assessed · 1,178 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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SRR12763389

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

67/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This NovaSeq 6000 amplicon run for SARS-CoV-2 yielded only 82,516 short reads (24.1 million bases) with outstanding quality (99.5% Q20, 98.5% Q30) and zero N-content, suggesting a minimal shallow run or positive-control sample. The exceptional quality affirms assay robustness, but limited read depth restricts use to quick variant confirmation rather than discovery. Most valuable as a quality reference or for single-target validation.

Data type / assay
amplicon
Organism
Severe acute respiratory syndrome coronavirus 2
Instrument
Illumina NovaSeq 6000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 24094672 reported
total reads 82516 reported
n content pct 0 measured
pct q20 bases 99.5 measured
pct q30 bases 98.5 measured
gc content pct 40.4 measured
mean read length 146 measured
mean base quality 37.4 measured
adapter content pct 29.26 measured
duplication rate pct 71.56 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 67/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 98.5 measured ×1 100%
adapter content pct 29.26 measured ×0.5 0%
QC cost 5 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0