SRR12808990

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

93/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Bulk RNA-seq of Melitaea cinxia from NextSeq 500 generating ~5.8M short reads at strong quality (Q30: 94.2%), capturing transcriptome-wide expression for developmental, ecological, or population genetics studies. The 41.7% GC content is reasonable for lepidopteran transcriptomes and supports quantitative transcript abundance profiling.

Data type / assay

bulk-RNA-seq

Organism

Melitaea cinxia

Instrument

NextSeq 500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 877980272 reported

total reads 5776186 reported

n content pct 0.028 measured

pct q20 bases 95.8 measured

pct q30 bases 94.2 measured

gc content pct 41.7 measured

mean read length 86 measured

mean base quality 34.4 measured

adapter content pct 0.29 measured

duplication rate pct 48.13 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 93/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 94.2 measured ×1 100%

mean base quality 34.4 measured ×0.6 100%

adapter content pct 0.29 measured ×0.4 100%

duplication rate pct 48.13 measured ×0.4 60%

QC cost 21 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0