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SRR12821655
SRAProvenance — who produced it, who reused it
Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
No linked papers found in the corpus yet.
Deep data QC
100/100 · AStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
WGS
Organism
Eucalyptus sideroxylon x Eucalyptus melliodora
Instrument
MinION
Platform
OXFORD_NANOPORE
Read type
long-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
gc sd
3.98
measured
checksum ok
yes
reported
total bases
38010868536
reported
total reads
2096002
reported
n content pct
0
measured
pct q20 bases
54.4
measured
pct q30 bases
20.9
measured
pct reads q30
0
measured
sampled bases
51872429
measured
sampled reads
3223
measured
gc content pct
39.1
measured
polyg tail pct
0
measured
read length sd
13418.2
measured
quality dropoff
8.3
measured
read length max
87762
measured
read length min
69
measured
read length n50
25074
measured
max base quality
90
measured
mean read length
16094.5
measured
max n pct per pos
0
measured
mean base quality
19.9
measured
pct reads lt 100bp
0.03
measured
read length median
13307
measured
adapter content pct
0
measured
median read quality
20.9
measured
duplication rate pct
0
measured
overrepresented top pct
0.03
measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 100/100
The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.
read length n50
25074
measured
×1
100%
mean base quality
19.9
measured
×0.8
99%
duplication rate pct
0
measured
×0.5
100%
adapter content pct
0
measured
×0.4
100%
QC cost
20 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0