Corpus 1,275 assessed · 1,176 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74.1/100
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SRR1284285

ENA first seen 2014

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

33/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Amplicon sequencing of plant metagenome using 454 GS FLX+ platform, producing 4,730 medium-length reads totaling 3.9 million bases. This 454-based amplicon dataset enables taxonomic classification of plant-associated microbiota; 454 longer reads improve species-level resolution versus short-read platforms, though modest read count limits community depth.

Data type / assay
amplicon
Organism
plant metagenome
Instrument
454 GS FLX+
Platform
LS454
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 3994960 reported
total reads 4730 reported
n content pct 0.004 measured
pct q20 bases 83.6 measured
pct q30 bases 55.2 measured
gc content pct 54.8 measured
mean read length 589.7 measured
mean base quality 29.8 measured
adapter content pct 0 measured
duplication rate pct 83.36 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 33/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 55.2 measured ×1 0%
adapter content pct 0 measured ×0.5 100%
QC cost 1 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0