Corpus 1,277 assessed · 1,178 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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SRR1284620

ENA first seen 2014

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

47/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This PacBio RS II single-molecule long-read WGS dataset from Neurospora crassa generates 163k long reads totaling 2.5 billion bases. Notably, quality scores are not available (0% ≥Q20, ≥Q30) as PacBio sequencing reports accuracy through read length and depth rather than Phred scores; however, the 51% GC composition is typical. This long-read dataset enables resolving repetitive regions and complex structural variants, supporting reference-quality genome assembly in this fungal model organism.

Data type / assay
WGS
Organism
Neurospora crassa OR74A
Instrument
PacBio RS II
Platform
PACBIO_SMRT
Read type
long-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 2515190973 reported
total reads 163482 reported
n content pct 0 measured
pct q20 bases 0 measured
pct q30 bases 0 measured
gc content pct 51 measured
mean read length 6779.4 measured
mean base quality 7 measured
adapter content pct 0 measured
duplication rate pct 0 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 47/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 0 measured ×1 0%
duplication rate pct 0 measured ×0.5 100%
adapter content pct 0 measured ×0.4 100%
QC cost 36 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0