Corpus 1,280 assessed · 1,181 scored · 646 reproduced ≥75 · 170 flagged ·∅ 74/100
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SRR1291041

ENA first seen 2017

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

57/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

High-coverage (24×) short-read whole-genome sequencing of human DNA on HiSeq 2000; ~150M reads achieve 74.8 Gb of bases suitable for SNP and indel detection. Q30 quality at 67.2% is moderate for Illumina short reads, and ~0.5% N content indicates some sequencing artifact. Appropriate for population genetics, linkage analysis, and diploid variant calling in moderately diverse genomes.

Data type / assay
WGS
Organism
Homo sapiens
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 74839255500 reported
total reads 149678511 reported
mean coverage 24.1 extrapolated
n content pct 0.495 measured
pct q20 bases 77.4 measured
pct q30 bases 67.2 measured
gc content pct 50.6 measured
mean read length 250 measured
mean base quality 27.4 measured
adapter content pct 0.88 measured
duplication rate pct 1.23 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 57/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 24.1 extrapolated ×1.2 73%
pct q30 bases 67.2 measured ×1 0%
duplication rate pct 1.23 measured ×0.5 100%
adapter content pct 0.88 measured ×0.4 100%
QC cost 34 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0