SRR12938556

ENA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

42/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Whole-genome WGS of human Homo sapiens via HiSeq 2500, generating 76 million reads at 4.6× coverage with high quality (96.8% Q30). This shallow human WGS dataset enables variant discovery in specific genomic regions, though low coverage limits sensitive SNP and indel detection across the full genome.

Data type / assay

WGS

Organism

Homo sapiens

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 14145885592 reported

total reads 76879813 reported

mean coverage 4.6 extrapolated

n content pct 0.209 measured

pct q20 bases 97.5 measured

pct q30 bases 96.8 measured

gc content pct 40.8 measured

mean read length 92 measured

mean base quality 38.5 measured

adapter content pct 12.01 measured

duplication rate pct 26.56 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 42/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 4.6 extrapolated ×1.2 0%

pct q30 bases 96.8 measured ×1 100%

duplication rate pct 26.56 measured ×0.5 42%

adapter content pct 12.01 measured ×0.4 21%

QC cost 14 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0