SRR12949983

ENA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

57/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Whole-genome sequencing of Escherichia phage JB01 bacteriophage on HiSeq 3000; 12.5M reads achieve excellent quality (Q30 97%, minimal N at 0.002%) for clean viral genome assembly. Useful for phage genomics, viral evolution studies, and characterization of host-pathogen interactions in bacterial systems.

Data type / assay

WGS

Organism

Escherichia phage JB01

Instrument

Illumina HiSeq 3000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 3736194000 reported

total reads 12453980 reported

n content pct 0.002 measured

pct q20 bases 98.9 measured

pct q30 bases 97 measured

gc content pct 35.7 measured

mean read length 150 measured

mean base quality 39.7 measured

adapter content pct 12.28 measured

duplication rate pct 80.31 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 57/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 97 measured ×1 100%

duplication rate pct 80.31 measured ×0.5 0%

adapter content pct 12.28 measured ×0.4 19%

QC cost 25 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0