SRR12950073

ENA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

71/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Mus musculus (mouse) whole-genome sequencing on Illumina NovaSeq 6000 with exceptional depth (104.5×) and quality (Q30 99.9%); 986M reads total. This high-quality mammalian reference enables comprehensive variant discovery, structural variant detection, and de novo assembly of complex genomic regions including repeats and large tandem duplications.

Data type / assay

WGS

Organism

Mus musculus

Instrument

Illumina NovaSeq 6000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 282063935296 reported

total reads 986237536 reported

mean coverage 104.5 extrapolated

n content pct 0.002 measured

pct q20 bases 99.9 measured

pct q30 bases 99.9 measured

gc content pct 44.7 measured

mean read length 143 measured

mean base quality 30 measured

adapter content pct 36.15 measured

duplication rate pct 88.65 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 71/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 104.5 extrapolated ×1.2 100%

pct q30 bases 99.9 measured ×1 100%

duplication rate pct 88.65 measured ×0.5 0%

adapter content pct 36.15 measured ×0.4 0%

QC cost 33 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0