SRR1297049

ENA first seen 2014

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

61/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

E. coli whole-genome sequencing on AB 5500xl (SOLiD) generates 15.1M color-space short reads achieving very high coverage (163.8×). Quality is moderate for SOLiD platform (Q30 58.9%); color-space encoding may require specialized alignment tools but enables sensitive detection of homopolymer errors and validation of Illumina variants.

Data type / assay

WGS

Organism

Escherichia coli

Instrument

AB 5500xl Genetic Analyzer

Platform

ABI_SOLID

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 753352800 reported

total reads 15067056 reported

mean coverage 163.8 extrapolated

n content pct 0 measured

pct q20 bases 81.1 measured

pct q30 bases 58.9 measured

gc content pct 50.2 measured

mean read length 50 measured

mean base quality 26.5 measured

adapter content pct 0 measured

duplication rate pct 22.26 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 61/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 163.8 extrapolated ×1.2 100%

pct q30 bases 58.9 measured ×1 0%

duplication rate pct 22.26 measured ×0.5 55%

adapter content pct 0 measured ×0.4 100%

QC cost 10 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0